Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| co-chaperone ybbn | BST98_RS03875 | Not Available | Negative | 741665 - 742519 | 31823.1 |
| sdr family nad(p)-dependent oxidoreductase | BST98_RS03880 | Not Available | Negative | 742793 - 743617 | 30826.3 |
| tigr01777 family oxidoreductase | BST98_RS03885 | Not Available | Negative | 743634 - 744542 | 33688.7 |
| phosphodiesterase | BST98_RS03890 | Not Available | Positive | 744672 - 745220 | 20328.7 |
| phosphate acetyltransferase | BST98_RS03895 | Not Available | Negative | 745323 - 747455 | 76302.4 |
| acetate kinase | BST98_RS03900 | Not Available | Negative | 747632 - 748828 | 42852.4 |
| terminus macrodomain insulation protein yfbv | BST98_RS03905 | Not Available | Positive | 749168 - 749617 | 17466.5 |
| chan family lipoprotein | BST98_RS03910 | Not Available | Negative | 749833 - 750771 | 34944.8 |
| 23s rrna (guanine(745)-n(1))-methyltransferase | BST98_RS03915 | Not Available | Negative | 750890 - 751717 | 31672.5 |
| porin | BST98_RS03920 | Not Available | Positive | 752204 - 753274 | 39014.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

