Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-8-phosphooctulonate synthase | BST98_RS03770 | Not Available | Positive | 722396 - 723250 | 31265.7 |
| aromatic amino acid transport family protein | BST98_RS03775 | Not Available | Positive | 723548 - 724801 | 45840.2 |
| methyl-accepting chemotaxis protein | BST98_RS03780 | Not Available | Negative | 724902 - 726785 | 68031.7 |
| na+/h+ antiporter nhac family protein | BST98_RS03785 | Not Available | Positive | 727088 - 728446 | 47165.5 |
| bifunctional udp-sugar hydrolase/5'-nucleotidase usha | BST98_RS03795 | Not Available | Positive | 728731 - 730398 | 61214.7 |
| cys-trna(pro) deacylase | BST98_RS03800 | Not Available | Positive | 730541 - 731020 | 16874.5 |
| lyse family translocator | BST98_RS03805 | Not Available | Positive | 731084 - 731698 | 21604.2 |
| dna endonuclease smra | BST98_RS03810 | Not Available | Negative | 731765 - 732346 | 22247.9 |
| Trna-pro | Not Available | Not Available | Positive | 732774 - 732850 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 732890 - 732966 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

