Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| redox-regulated atpase ychf | BST98_RS03720 | Not Available | Negative | 712938 - 714029 | 39702.7 |
| aminoacyl-trna hydrolase | BST98_RS03725 | Not Available | Negative | 714091 - 714681 | 21435.9 |
| ribose-phosphate pyrophosphokinase | BST98_RS03730 | Not Available | Negative | 714998 - 715945 | 34340.4 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | BST98_RS03735 | Not Available | Negative | 715978 - 716847 | 31672.8 |
| lipoprotein insertase outer membrane protein lolb | BST98_RS03740 | Not Available | Negative | 716862 - 717515 | 24592.5 |
| glutamyl-trna reductase | BST98_RS03745 | Not Available | Positive | 717776 - 719029 | 45739.8 |
| peptide chain release factor 1 | BST98_RS03750 | Not Available | Positive | 719199 - 720287 | 40644.8 |
| peptide chain release factor n(5)-glutamine methyltransferase | BST98_RS03755 | Not Available | Positive | 720289 - 721137 | 30936.9 |
| sirb2 family protein | BST98_RS03760 | Not Available | Positive | 721150 - 721530 | 13836.7 |
| sirb1 family protein | BST98_RS03765 | Not Available | Positive | 721572 - 722381 | 31234.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

