Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lps assembly lipoprotein lpte | BST98_RS03520 | Not Available | Negative | 695958 - 696644 | 25460.2 |
| leucine--trna ligase | BST98_RS03525 | Not Available | Negative | 696787 - 699363 | 97110.2 |
| zinc ribbon-containing protein | BST98_RS03530 | Not Available | Positive | 699723 - 700205 | 18038.6 |
| ysc84-related protein | BST98_RS03535 | Not Available | Negative | 700322 - 701017 | 24477.9 |
| apolipoprotein n-acyltransferase | BST98_RS03540 | Not Available | Negative | 701134 - 702687 | 57859.1 |
| cnnm family magnesium/cobalt transport protein corc | BST98_RS03545 | Not Available | Negative | 702694 - 703566 | 33158.9 |
| rrna maturation rnase ybey | BST98_RS03550 | Not Available | Negative | 703644 - 704108 | 17465.4 |
| phoh family protein | BST98_RS03555 | Not Available | Negative | 704108 - 705226 | 41758.1 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | BST98_RS03560 | Not Available | Negative | 705349 - 706773 | 53488.0 |
| monofunctional biosynthetic peptidoglycan transglycosylase | BST98_RS03565 | Not Available | Negative | 706938 - 707630 | 26510.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

