Photobacterium damselae strain Phdp Wu-1

CoccusMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae strain Phdp Wu-1 is a Gram-negative, coccus-shaped bacterium primarily found in marine environments, particularly within Italian aquaculture settings. This strain is characterized by its mesophilic temperature range, indicating optimal growth at moderate temperatures. It possesses flagella, which contribute to its motility, allowing it to navigate its aquatic habitat effectively. P. damselae strain Phdp Wu-1 has a notable genetic structure, consisting of three replicons. This genetic configuration may play a role in its adaptability and survival in a competitive marine ecosystem. The bacterium has been identified as a pathogen, associated with soft-tissue infections in humans (Homo sapiens) and also affecting seabirds such as the razorbill (Alca torda). The presence of P. damselae in aquaculture systems raises concerns about potential health impacts on both human populations and wildlife, particularly in regions where aquaculture practices intersect with natural habitats. The strain's ability to cause infections highlights the importance of monitoring and managing microbial populations in aquaculture to prevent outbreaks that could affect both public health and biodiversity. Accessions for this strain include NZ_CP018297.1, NZ_CP018298.1, and NZ_CP018299.1, which provide genetic sequences that may be valuable for further research into its pathogenic mechanisms and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainstrain Phdp Wu-1

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Photobacterium damselae strain Phdp Wu-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
HabitatItalian aquaculture; Marine
Biotic relationshipNot Available
Host(s)Homo sapiens, Alca torda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete

Gene Summary

Adenine Count

929587 bp

Thymine Count

931950 bp

Guanine Count

663051 bp

Cytosine Count

665361 bp

Genome Length

3189949 bp

Protein-coding Genes

2659 genes

Non-Coding Genes

265 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lps assembly lipoprotein lpteBST98_RS03520Not AvailableNegative695958 - 69664425460.2
leucine--trna ligaseBST98_RS03525Not AvailableNegative696787 - 69936397110.2
zinc ribbon-containing proteinBST98_RS03530Not AvailablePositive699723 - 70020518038.6
ysc84-related proteinBST98_RS03535Not AvailableNegative700322 - 70101724477.9
apolipoprotein n-acyltransferaseBST98_RS03540Not AvailableNegative701134 - 70268757859.1
cnnm family magnesium/cobalt transport protein corcBST98_RS03545Not AvailableNegative702694 - 70356633158.9
rrna maturation rnase ybeyBST98_RS03550Not AvailableNegative703644 - 70410817465.4
phoh family proteinBST98_RS03555Not AvailableNegative704108 - 70522641758.1
trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miabBST98_RS03560Not AvailableNegative705349 - 70677353488.0
monofunctional biosynthetic peptidoglycan transglycosylaseBST98_RS03565Not AvailableNegative706938 - 70763026510.6

Displaying genes 701 – 710 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft-tissue infectionCausesPMC8231020

Displaying health effects 1 – 1 of 1 in total