Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoyl synthase | BST98_RS03470 | Not Available | Negative | 686386 - 687354 | 36437.0 |
| lipoyl(octanoyl) transferase lipb | BST98_RS03475 | Not Available | Negative | 687354 - 688001 | 24005.6 |
| duf493 family protein ybed | BST98_RS03480 | Not Available | Negative | 688121 - 688393 | 10156.3 |
| serine hydrolase | BST98_RS03485 | Not Available | Negative | 688588 - 689763 | 42732.1 |
| septal ring lytic transglycosylase rlpa family protein | BST98_RS03490 | Not Available | Negative | 689999 - 690868 | 32356.7 |
| peptidoglycan glycosyltransferase mrdb | BST98_RS03495 | Not Available | Negative | 690869 - 691990 | 40839.8 |
| penicillin-binding protein 2 | BST98_RS03500 | Not Available | Negative | 691987 - 693948 | 74111.1 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | BST98_RS03505 | Not Available | Negative | 693955 - 694425 | 17458.2 |
| ribosome silencing factor | BST98_RS03510 | Not Available | Negative | 694432 - 694749 | 11889.3 |
| dna polymerase iii subunit delta | BST98_RS03515 | Not Available | Negative | 694933 - 695961 | 39143.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

