Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sec-independent protein translocase subunit tatc | BST98_RS00305 | Not Available | Positive | 62128 - 62883 | 28176.0 |
| 3'-5' ssdna/rna exonuclease tatd | BST98_RS00310 | Not Available | Positive | 62955 - 63743 | 29606.6 |
| porphobilinogen synthase | BST98_RS00315 | Not Available | Positive | 63872 - 64909 | 38187.9 |
| hypothetical protein | BST98_RS00320 | Not Available | Positive | 65137 - 65490 | 13157.9 |
| hypothetical protein | BST98_RS00325 | Not Available | Positive | 65866 - 66057 | 7365.89 |
| arginine decarboxylase | BST98_RS00330 | Not Available | Negative | 66213 - 68510 | 85497.4 |
| putrescine-ornithine antiporter | BST98_RS00335 | Not Available | Negative | 68701 - 70026 | 46743.9 |
| coniferyl aldehyde dehydrogenase | BST98_RS00340 | Not Available | Negative | 70686 - 72146 | 54540.2 |
| pp_00053 | BST98_RS00345 | Not Available | Negative | 72259 - 72840 | Not Available |
| hypothetical protein | BST98_RS00350 | Not Available | Negative | 72900 - 73346 | 16536.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

