Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class ii glutamine amidotransferase | BST98_RS03370 | Not Available | Positive | 665880 - 666659 | 29291.5 |
| phosphoribosylglycinamide formyltransferase | BST98_RS03375 | Not Available | Negative | 666788 - 667435 | 23455.9 |
| phosphoribosylformylglycinamidine cyclo-ligase | BST98_RS03380 | Not Available | Negative | 667439 - 668479 | 37116.2 |
| uracil phosphoribosyltransferase | BST98_RS03385 | Not Available | Positive | 668676 - 669302 | 22742.8 |
| marr family winged helix-turn-helix transcriptional regulator | BST98_RS03390 | Not Available | Negative | 669365 - 669799 | 16755.4 |
| efflux rnd transporter periplasmic adaptor subunit | BST98_RS03395 | Not Available | Positive | 669967 - 671163 | 42753.2 |
| efflux rnd transporter permease subunit | BST98_RS03400 | Not Available | Positive | 671180 - 674293 | 112431.0 |
| uracil-xanthine permease family protein | BST98_RS03405 | Not Available | Negative | 674392 - 675657 | 43988.5 |
| duf2066 domain-containing protein | BST98_RS03410 | Not Available | Positive | 676058 - 677182 | 41003.4 |
| duf2069 domain-containing protein | BST98_RS03415 | Not Available | Negative | 677329 - 677760 | 16622.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

