Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yip1 family protein | BST98_RS03320 | Not Available | Negative | 654061 - 654753 | 25985.0 |
| lysm peptidoglycan-binding domain-containing protein | BST98_RS03325 | Not Available | Negative | 654769 - 656319 | 58271.0 |
| hydroxyacylglutathione hydrolase | BST98_RS03330 | Not Available | Negative | 656390 - 657148 | 27931.0 |
| class i sam-dependent methyltransferase | BST98_RS03335 | Not Available | Positive | 657190 - 657981 | 30144.4 |
| ribonuclease hi | BST98_RS03340 | Not Available | Negative | 657982 - 658443 | 17459.4 |
| dna polymerase iii subunit epsilon | BST98_RS03345 | Not Available | Positive | 658495 - 659220 | 26964.4 |
| tigr03503 family protein | BST98_RS03350 | Not Available | Positive | 659222 - 660457 | 46968.4 |
| acyl-coa dehydrogenase fade | BST98_RS03355 | Not Available | Negative | 660486 - 662936 | 89624.8 |
| c4-dicarboxylic acid transporter daua | BST98_RS03360 | Not Available | Positive | 663444 - 665165 | 61096.9 |
| d-sedoheptulose 7-phosphate isomerase | BST98_RS03365 | Not Available | Positive | 665245 - 665823 | 20927.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

