Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa carboxylase carboxyl transferase subunit alpha | BST98_RS03170 | Not Available | Positive | 627062 - 628021 | 35220.5 |
| trna lysidine(34) synthetase tils | BST98_RS03175 | Not Available | Positive | 628197 - 629504 | 49581.2 |
| d-alanine--d-alanine ligase | BST98_RS03180 | Not Available | Positive | 629656 - 630567 | 33354.2 |
| aromatic amino acid transporter | BST98_RS03185 | Not Available | Positive | 630771 - 631982 | 42970.3 |
| duf4250 domain-containing protein | BST98_RS03190 | Not Available | Negative | 632048 - 632236 | 7264.87 |
| yaep family protein | BST98_RS03195 | Not Available | Negative | 632240 - 632443 | 7332.86 |
| ggdef domain-containing protein | BST98_RS03200 | Not Available | Negative | 632584 - 633444 | 33268.5 |
| proline--trna ligase | BST98_RS03205 | Not Available | Negative | 633640 - 635358 | 63286.5 |
| trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmo | BST98_RS03210 | Not Available | Negative | 635490 - 636188 | 25651.5 |
| type b 50s ribosomal protein l31 | BST98_RS03215 | Not Available | Positive | 636310 - 636570 | 10012.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

