Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | BST98_RS03120 | Not Available | Positive | 613635 - 614831 | 42952.2 |
| sigma e protease regulator rsep | BST98_RS03125 | Not Available | Positive | 614828 - 616183 | 49216.3 |
| outer membrane protein assembly factor bama | BST98_RS03130 | Not Available | Positive | 616220 - 618643 | 90154.7 |
| omph family outer membrane protein | BST98_RS03135 | Not Available | Positive | 618664 - 619173 | 18896.9 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | BST98_RS03140 | Not Available | Positive | 619278 - 620306 | 36194.6 |
| 3-hydroxyacyl-acp dehydratase fabz | BST98_RS03145 | Not Available | Positive | 620406 - 620861 | 17018.7 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | BST98_RS03150 | Not Available | Positive | 620858 - 621646 | 28406.0 |
| lipid-a-disaccharide synthase | BST98_RS03155 | Not Available | Positive | 621646 - 622788 | 42674.2 |
| ribonuclease hii | BST98_RS03160 | Not Available | Positive | 622794 - 623399 | 22032.6 |
| dna polymerase iii subunit alpha | BST98_RS03165 | Not Available | Positive | 623517 - 626996 | 130064.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

