Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | BST98_RS03005 | Not Available | Negative | 592436 - 593284 | 32506.2 |
| secy-interacting protein | BST98_RS03010 | Not Available | Positive | 593417 - 593971 | 20694.8 |
| zn-ribbon-containing protein | BST98_RS03015 | Not Available | Positive | 593974 - 594747 | 29111.7 |
| hypothetical protein | BST98_RS03020 | Not Available | Negative | 594773 - 595042 | 10013.3 |
| duf2789 family protein | BST98_RS03025 | Not Available | Negative | 595059 - 595289 | 8829.31 |
| nitric-oxide reductase large subunit | BST98_RS03045 | Not Available | Negative | 597536 - 599800 | 84405.9 |
| nitric oxide reductase transcriptional regulator norr | BST98_RS03050 | Not Available | Positive | 599991 - 601511 | 57114.1 |
| duf3301 domain-containing protein | BST98_RS03055 | Not Available | Negative | 601497 - 601820 | 12893.4 |
| duf3549 family protein | BST98_RS03060 | Not Available | Negative | 601824 - 602864 | 39252.3 |
| yqcc family protein | BST98_RS03065 | Not Available | Positive | 603013 - 603330 | 12048.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

