Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine desulfurase sulfur acceptor subunit csde | BST98_RS02955 | Not Available | Negative | 580727 - 581152 | 15888.0 |
| cysteine desulfurase csda | BST98_RS02960 | Not Available | Negative | 581170 - 582390 | 44119.8 |
| transcriptional regulator gcva | BST98_RS02965 | Not Available | Positive | 582762 - 583673 | 34204.0 |
| alpha/beta family hydrolase | BST98_RS02970 | Not Available | Positive | 583663 - 584361 | 25583.6 |
| duf423 domain-containing protein | BST98_RS02975 | Not Available | Positive | 584366 - 584770 | 14309.8 |
| 23s rrna (cytidine(2498)-2'-o)-methyltransferase rlmm | BST98_RS02980 | Not Available | Positive | 584780 - 585868 | 41522.2 |
| flap endonuclease xni | BST98_RS02985 | Not Available | Negative | 585925 - 586701 | 28600.2 |
| nucleotide 5'-monophosphate nucleosidase ppnn | BST98_RS02990 | Not Available | Negative | 586773 - 588149 | 51243.7 |
| sensor domain-containing diguanylate cyclase | BST98_RS02995 | Not Available | Negative | 588341 - 589891 | 59760.7 |
| tetratricopeptide repeat protein | BST98_RS03000 | Not Available | Negative | 590041 - 592317 | 87610.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

