Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome hibernation-promoting factor, hpf/yfia family | BST98_RS02810 | Not Available | Negative | 542218 - 542577 | 13676.3 |
| outer membrane protein assembly factor bamd | BST98_RS02815 | Not Available | Negative | 542981 - 543709 | 27965.3 |
| 23s rrna pseudouridine(1911/1915/1917) synthase rlud | BST98_RS02820 | Not Available | Positive | 543878 - 544852 | 36698.4 |
| peptidoglycan editing factor pgef | BST98_RS02825 | Not Available | Positive | 544852 - 545586 | 26679.7 |
| atp-dependent chaperone clpb | BST98_RS02830 | Not Available | Positive | 545754 - 548327 | 95680.0 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 548797 - 550362 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 550434 - 550510 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 550555 - 550630 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 550902 - 553793 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 553946 - 554061 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

