Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yqaa family protein | BST98_RS02710 | Not Available | Positive | 520969 - 521415 | 16255.1 |
| m16 family metallopeptidase | BST98_RS02715 | Not Available | Positive | 521428 - 524274 | 105275.0 |
| glutamate--cysteine ligase | BST98_RS02720 | Not Available | Positive | 524429 - 525994 | 59214.9 |
| hypothetical protein | BST98_RS02725 | Not Available | Positive | 526118 - 526729 | 23838.2 |
| s-ribosylhomocysteine lyase | BST98_RS02730 | Not Available | Positive | 526768 - 527283 | 18919.8 |
| hlyc/corc family transporter | BST98_RS02735 | Not Available | Negative | 527389 - 528666 | 47315.1 |
| inner membrane protein ypjd | BST98_RS02740 | Not Available | Negative | 528709 - 529506 | 29117.2 |
| signal recognition particle protein | BST98_RS02745 | Not Available | Positive | 529708 - 531075 | 50102.5 |
| 30s ribosomal protein s16 | BST98_RS02750 | Not Available | Positive | 531247 - 531498 | 9163.15 |
| ribosome maturation factor rimm | BST98_RS02755 | Not Available | Positive | 531525 - 532058 | 20059.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

