Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | BST98_RS02560 | Not Available | Positive | 502684 - 503157 | 16623.1 |
| trna pseudouridine(13) synthase trud | BST98_RS02565 | Not Available | Positive | 503161 - 504216 | 39460.7 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | BST98_RS02570 | Not Available | Positive | 504333 - 504962 | 23124.8 |
| peptidoglycan dd-metalloendopeptidase family protein | BST98_RS02575 | Not Available | Positive | 504966 - 505802 | 30184.9 |
| rna polymerase sigma factor rpos | BST98_RS02580 | Not Available | Positive | 505856 - 506857 | 37672.4 |
| dna mismatch repair protein muts | BST98_RS02585 | Not Available | Negative | 507007 - 509610 | 96260.4 |
| nicotinamide-nucleotide amidase | BST98_RS02590 | Not Available | Positive | 509823 - 510311 | 17266.5 |
| recombinase reca | BST98_RS02595 | Not Available | Positive | 510437 - 511504 | 38245.1 |
| voltage-gated potassium channel protein | BST98_RS02600 | Not Available | Positive | 511693 - 512925 | 45452.5 |
| alanine--trna ligase | BST98_RS02605 | Not Available | Positive | 513202 - 515823 | 95141.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

