Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-aspartate oxidase | BST98_RS02460 | Not Available | Negative | 479512 - 481128 | 60106.2 |
| rna polymerase sigma factor rpoe | BST98_RS02465 | Not Available | Positive | 481542 - 482120 | 21879.1 |
| rsea family anti-sigma factor | BST98_RS02470 | Not Available | Positive | 482144 - 482794 | 23594.6 |
| sigma-e factor regulatory protein rseb | BST98_RS02475 | Not Available | Positive | 482794 - 483774 | 36580.1 |
| soxr reducing system rsec family protein | BST98_RS02480 | Not Available | Positive | 483789 - 484286 | 17469.4 |
| translation elongation factor 4 | BST98_RS02485 | Not Available | Positive | 484364 - 486160 | 66057.5 |
| signal peptidase i | BST98_RS02490 | Not Available | Positive | 486309 - 487199 | 33159.2 |
| ribonuclease iii | BST98_RS02495 | Not Available | Positive | 487210 - 487884 | 25032.9 |
| gtpase era | BST98_RS02500 | Not Available | Positive | 487881 - 488786 | 34626.9 |
| dna repair protein reco | BST98_RS02505 | Not Available | Positive | 488796 - 489506 | 26835.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

