Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1107 domain-containing protein | BST98_RS02410 | Not Available | Negative | 473706 - 473909 | 8012.81 |
| duf134 domain-containing protein | BST98_RS02415 | Not Available | Positive | 474451 - 474744 | 10848.6 |
| nifb/nifx family molybdenum-iron cluster-binding protein | BST98_RS02420 | Not Available | Positive | 474745 - 475218 | 16877.8 |
| (na+)-nqr maturation nqrm | BST98_RS02425 | Not Available | Positive | 475215 - 475409 | 6977.72 |
| lysr family transcriptional regulator | BST98_RS02430 | Not Available | Negative | 475501 - 476433 | 35552.9 |
| hypothetical protein | BST98_RS02435 | Not Available | Negative | 476520 - 476891 | 14064.4 |
| aminoacyl-trna deacylase | BST98_RS02440 | Not Available | Negative | 477069 - 477536 | 16851.8 |
| pp_00432 | BST98_RS02445 | Not Available | Negative | 477543 - 478514 | Not Available |
| succinate dehydrogenase assembly factor 2 | BST98_RS02450 | Not Available | Positive | 478783 - 479043 | 9871.9 |
| protein ygfx | BST98_RS02455 | Not Available | Positive | 479012 - 479464 | 17994.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

