Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (uracil(1498)-n(3))-methyltransferase | BST98_RS02310 | Not Available | Negative | 453639 - 454370 | 26990.6 |
| deoxyribonuclease i | BST98_RS02315 | Not Available | Negative | 454502 - 455206 | 27155.6 |
| sprt family zinc-dependent metalloprotease | BST98_RS02320 | Not Available | Negative | 455337 - 455819 | 18670.6 |
| methionine adenosyltransferase | BST98_RS02325 | Not Available | Negative | 455922 - 457076 | 42059.1 |
| transketolase | BST98_RS02330 | Not Available | Positive | 457494 - 459506 | 72640.8 |
| erythrose-4-phosphate dehydrogenase | BST98_RS02335 | Not Available | Positive | 459794 - 460834 | 38416.6 |
| phosphoglycerate kinase | BST98_RS02340 | Not Available | Positive | 460909 - 462072 | 40745.9 |
| class ii fructose-bisphosphate aldolase | BST98_RS02345 | Not Available | Positive | 462213 - 463289 | 38808.9 |
| small-conductance mechanosensitive channel mscs | BST98_RS02350 | Not Available | Positive | 463638 - 464522 | 31726.5 |
| ybak/ebsc family protein | BST98_RS02355 | Not Available | Negative | 464608 - 465066 | 17094.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

