Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xtp/ditp diphosphatase | BST98_RS02260 | Not Available | Negative | 445934 - 446527 | 21554.4 |
| duf167 family protein yggu | BST98_RS02265 | Not Available | Negative | 446629 - 446928 | 10924.5 |
| yggt family protein | BST98_RS02270 | Not Available | Negative | 446925 - 447482 | 20902.6 |
| pyrroline-5-carboxylate reductase | BST98_RS02275 | Not Available | Negative | 447494 - 448312 | 28581.4 |
| yggs family pyridoxal phosphate-dependent enzyme | BST98_RS02280 | Not Available | Negative | 448328 - 449029 | 25435.2 |
| type iv pilus twitching motility protein pilt | BST98_RS02285 | Not Available | Positive | 449052 - 450086 | 38202.1 |
| pilt/pilu family type 4a pilus atpase | BST98_RS02290 | Not Available | Positive | 450098 - 451204 | 41357.0 |
| holliday junction resolvase ruvx | BST98_RS02295 | Not Available | Negative | 451532 - 451957 | 15721.7 |
| yqge/algh family protein | BST98_RS02300 | Not Available | Negative | 451954 - 452517 | 20509.3 |
| glutathione synthase | BST98_RS02305 | Not Available | Negative | 452671 - 453618 | 35233.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

