Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-asp | Not Available | Not Available | Positive | 1376394 - 1376470 | Not Available |
| lysr family transcriptional regulator | BST98_RS20550 | Not Available | Negative | 1376589 - 1377479 | 33213.2 |
| urease accessory protein ureg | BST98_RS20555 | Not Available | Negative | 1377608 - 1378228 | 22429.1 |
| urease accessory protein uref | BST98_RS20560 | Not Available | Negative | 1378241 - 1378906 | 24941.3 |
| urease accessory protein uree | BST98_RS20565 | Not Available | Negative | 1378936 - 1379394 | 16726.0 |
| urease subunit alpha | BST98_RS20570 | Not Available | Negative | 1379412 - 1381115 | 61056.1 |
| urease subunit beta | BST98_RS20575 | Not Available | Negative | 1381118 - 1381432 | 11823.5 |
| urease subunit gamma | BST98_RS20580 | Not Available | Negative | 1381442 - 1381744 | 11115.7 |
| urease accessory protein ured | BST98_RS20585 | Not Available | Negative | 1381769 - 1382617 | 32129.6 |
| abc transporter substrate-binding protein | BST98_RS20590 | Not Available | Positive | 1383138 - 1384712 | 58740.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

