Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit b family protein | BST98_RS20400 | Not Available | Positive | 1343504 - 1344367 | 31002.4 |
| formate hydrogenlyase maturation hych family protein | BST98_RS20405 | Not Available | Positive | 1344377 - 1344868 | 18589.2 |
| hydrogenase maturation peptidase hyci | BST98_RS20410 | Not Available | Positive | 1344865 - 1345404 | 19079.9 |
| 4fe-4s dicluster domain-containing protein | BST98_RS20415 | Not Available | Positive | 1345667 - 1346212 | 19563.8 |
| formate dehydrogenase subunit alpha | BST98_RS20420 | Not Available | Positive | 1346247 - 1348391 | 79091.1 |
| sigma 54-interacting transcriptional regulator | BST98_RS20425 | Not Available | Positive | 1348632 - 1350851 | 83907.4 |
| formate dehydrogenase accessory sulfurtransferase fdhd | BST98_RS20430 | Not Available | Positive | 1350884 - 1351714 | 30420.8 |
| hydrogenase maturation nickel metallochaperone hypa | BST98_RS20435 | Not Available | Positive | 1351728 - 1352069 | 12356.0 |
| hydrogenase nickel incorporation protein hypb | BST98_RS20440 | Not Available | Positive | 1352070 - 1353119 | 39159.1 |
| outer membrane protein | BST98_RS20445 | Not Available | Positive | 1353275 - 1353883 | 21840.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

