Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts n-acetylgalactosamine transporter subunit iib | BST98_RS20100 | Not Available | Negative | 1255548 - 1256021 | 17605.4 |
| transcriptional repressor agar | BST98_RS20105 | Not Available | Negative | 1256094 - 1256870 | 28630.2 |
| virk/ybjx family protein | BST98_RS20110 | Not Available | Positive | 1257274 - 1258209 | 36363.1 |
| hypothetical protein | BST98_RS20115 | Not Available | Negative | 1258412 - 1258594 | 6833.26 |
| linear amide c-n hydrolase | BST98_RS20120 | Not Available | Negative | 1259083 - 1260174 | 40011.3 |
| ncs2 family permease | BST98_RS20125 | Not Available | Negative | 1260339 - 1261700 | 46587.4 |
| serine dehydratase subunit alpha family protein | BST98_RS20130 | Not Available | Positive | 1262161 - 1263465 | 45142.6 |
| amino acid permease | BST98_RS20135 | Not Available | Positive | 1264037 - 1265365 | 48560.7 |
| lysr family transcriptional regulator | BST98_RS20140 | Not Available | Negative | 1265445 - 1266353 | 34284.5 |
| dmt family transporter | BST98_RS20145 | Not Available | Negative | 1266530 - 1267420 | 32382.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

