Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formimidoylglutamase | BST98_RS19700 | Not Available | Negative | 1170377 - 1171348 | 35930.2 |
| iclr family transcriptional regulator | BST98_RS19705 | Not Available | Negative | 1171394 - 1172128 | 26846.5 |
| yebc/pmpr family dna-binding transcriptional regulator | BST98_RS19710 | Not Available | Positive | 1172513 - 1173235 | 26673.7 |
| outer membrane protein transport protein | BST98_RS19715 | Not Available | Negative | 1173388 - 1174923 | 56157.1 |
| dj-1/pfpi family protein | BST98_RS19720 | Not Available | Negative | 1175157 - 1175735 | 21532.7 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | BST98_RS19725 | Not Available | Negative | 1175745 - 1176377 | 22555.4 |
| sugar kinase | BST98_RS19730 | Not Available | Negative | 1176370 - 1177344 | 36202.3 |
| tagatose bisphosphate family class ii aldolase | BST98_RS19735 | Not Available | Negative | 1177490 - 1178344 | 31329.6 |
| duf2264 domain-containing protein | BST98_RS19740 | Not Available | Negative | 1178624 - 1180162 | 58835.5 |
| sulfatase | BST98_RS19745 | Not Available | Negative | 1180351 - 1181982 | 59895.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

