Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | BST98_RS19650 | Not Available | Negative | 1158240 - 1159133 | 32457.8 |
| abc transporter substrate-binding protein | BST98_RS19655 | Not Available | Negative | 1159291 - 1160292 | 36600.4 |
| sugar-phosphatase | BST98_RS19660 | Not Available | Positive | 1160645 - 1161457 | 29725.2 |
| hypothetical protein | BST98_RS19665 | Not Available | Negative | 1161556 - 1161789 | 9436.12 |
| ygiw/ydei family stress tolerance ob fold protein | BST98_RS19670 | Not Available | Negative | 1161794 - 1162165 | 13067.5 |
| tetr/acrr family transcriptional regulator | BST98_RS19675 | Not Available | Negative | 1162408 - 1163019 | 23338.3 |
| efflux rnd transporter periplasmic adaptor subunit | BST98_RS19680 | Not Available | Positive | 1163219 - 1164316 | 39784.0 |
| efflux rnd transporter permease subunit | BST98_RS19685 | Not Available | Positive | 1164320 - 1167370 | 111349.0 |
| virk/ybjx family protein | BST98_RS19690 | Not Available | Negative | 1167437 - 1168327 | 35115.0 |
| amidohydrolase | BST98_RS19695 | Not Available | Positive | 1168711 - 1170147 | 53066.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

