Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | BST98_RS19495 | Not Available | Negative | 1121972 - 1122850 | 33175.7 |
| mate family efflux transporter | BST98_RS19500 | Not Available | Positive | 1122954 - 1124326 | 48823.3 |
| lysr family transcriptional regulator | BST98_RS19505 | Not Available | Negative | 1124353 - 1125291 | 35171.2 |
| cation:proton antiporter | BST98_RS19510 | Not Available | Positive | 1125518 - 1127308 | 65538.2 |
| dmt family transporter | BST98_RS19515 | Not Available | Positive | 1127500 - 1127829 | 11676.8 |
| hypothetical protein | BST98_RS19520 | Not Available | Positive | 1127869 - 1128105 | 9427.34 |
| copper chaperone pcu(a)c | BST98_RS19525 | Not Available | Positive | 1128172 - 1128582 | 15554.8 |
| phytanoyl-coa dioxygenase family protein | BST98_RS19530 | Not Available | Negative | 1128575 - 1129462 | 33962.0 |
| glycosyltransferase | BST98_RS19535 | Not Available | Negative | 1129428 - 1130699 | 49218.6 |
| acyltransferase | BST98_RS19540 | Not Available | Negative | 1130718 - 1131401 | 25370.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

