Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family dna-binding transcriptional regulator | BST98_RS19290 | Not Available | Positive | 1080621 - 1081631 | 37234.8 |
| Trna-ser | Not Available | Not Available | Positive | 1081728 - 1081818 | Not Available |
| glpm family protein | BST98_RS19300 | Not Available | Negative | 1081948 - 1082298 | 12518.8 |
| hypothetical protein | BST98_RS19305 | Not Available | Positive | 1082622 - 1083179 | 20725.7 |
| rna methyltransferase | BST98_RS19310 | Not Available | Positive | 1083279 - 1083827 | 20111.7 |
| Trna-ser | Not Available | Not Available | Positive | 1083914 - 1084004 | Not Available |
| cold shock domain-containing protein | BST98_RS19320 | Not Available | Negative | 1084213 - 1084413 | 7197.65 |
| pyridoxal kinase pdxy | BST98_RS19325 | Not Available | Positive | 1085150 - 1086004 | 30931.3 |
| sensor domain-containing diguanylate cyclase | BST98_RS19330 | Not Available | Positive | 1086211 - 1088370 | 83723.1 |
| peptide-methionine (s)-s-oxide reductase msra | BST98_RS19335 | Not Available | Positive | 1088388 - 1089017 | 23261.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

