Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase expression/formation protein hype | BST98_RS19240 | Not Available | Negative | 1068886 - 1069878 | 35593.6 |
| hydrogenase formation protein hypd | BST98_RS19245 | Not Available | Negative | 1069889 - 1071013 | 41198.1 |
| hypc/hybg/hupf family hydrogenase formation chaperone | BST98_RS19250 | Not Available | Negative | 1071013 - 1071267 | 9323.46 |
| carbamoyltransferase hypf | BST98_RS19255 | Not Available | Negative | 1071297 - 1073657 | 87873.0 |
| hypothetical protein | BST98_RS19260 | Not Available | Negative | 1073812 - 1074753 | 35448.5 |
| hypothetical protein | BST98_RS19265 | Not Available | Negative | 1075080 - 1075373 | 11251.8 |
| duf3316 domain-containing protein | BST98_RS19270 | Not Available | Positive | 1075429 - 1075779 | 13025.5 |
| c69 family dipeptidase | BST98_RS19275 | Not Available | Positive | 1076167 - 1077639 | 54824.6 |
| maly/patb family protein | BST98_RS19280 | Not Available | Negative | 1077776 - 1078945 | 44638.0 |
| na+/h+ antiporter nhac | BST98_RS19285 | Not Available | Negative | 1079004 - 1080461 | 50980.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

