Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pace efflux transporter | BST98_RS19140 | Not Available | Negative | 1049859 - 1050275 | 15814.8 |
| lema family protein | BST98_RS19145 | Not Available | Positive | 1050649 - 1051248 | 22611.9 |
| tpm domain-containing protein | BST98_RS19150 | Not Available | Positive | 1051249 - 1052013 | 27102.3 |
| tpm domain-containing protein | BST98_RS19155 | Not Available | Positive | 1052016 - 1052633 | 23336.4 |
| ygjv family protein | BST98_RS19160 | Not Available | Positive | 1052800 - 1053027 | 8493.83 |
| uracil-dna glycosylase family protein | BST98_RS19165 | Not Available | Positive | 1053034 - 1053768 | 27591.2 |
| rlua family pseudouridine synthase | BST98_RS19170 | Not Available | Positive | 1053843 - 1055525 | 64013.5 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | BST98_RS19175 | Not Available | Positive | 1055718 - 1055978 | 9719.4 |
| txe/yoeb family addiction module toxin | BST98_RS19180 | Not Available | Positive | 1055968 - 1056228 | 10320.4 |
| hypothetical protein | BST98_RS19185 | Not Available | Negative | 1056286 - 1056540 | 9945.75 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

