Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyl-accepting chemotaxis protein | BST98_RS02010 | Not Available | Negative | 406594 - 408507 | 69552.5 |
| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | BST98_RS02015 | Not Available | Positive | 408908 - 411505 | 93716.3 |
| glycerate kinase | BST98_RS02020 | Not Available | Negative | 411615 - 412748 | 38982.1 |
| gntp family permease | BST98_RS02025 | Not Available | Negative | 412759 - 414024 | 42399.7 |
| sugar diacid recognition domain-containing protein | BST98_RS02030 | Not Available | Negative | 414156 - 415313 | 43709.1 |
| yacl family protein | BST98_RS02035 | Not Available | Positive | 415369 - 415737 | 14278.5 |
| p-ii family nitrogen regulator | BST98_RS02040 | Not Available | Positive | 415920 - 416258 | 12348.0 |
| ammonium transporter | BST98_RS02045 | Not Available | Positive | 416322 - 417551 | 43055.6 |
| fe(3+) abc transporter substrate-binding protein | BST98_RS02050 | Not Available | Positive | 417743 - 418756 | 37682.9 |
| abc transporter permease | BST98_RS02055 | Not Available | Positive | 418912 - 420537 | 60399.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

