Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldolase | BST98_RS18940 | Not Available | Positive | 1006532 - 1007164 | 23301.0 |
| 2-oxo-tetronate isomerase | BST98_RS18945 | Not Available | Positive | 1007164 - 1007940 | 29878.6 |
| d-erythronate dehydrogenase | BST98_RS18950 | Not Available | Positive | 1008013 - 1008981 | 35313.6 |
| gntp family permease | BST98_RS18955 | Not Available | Positive | 1008981 - 1010486 | 52733.3 |
| conserved phage c-terminal domain-containing protein | BST98_RS18960 | Not Available | Negative | 1011329 - 1012180 | 31288.4 |
| helix-turn-helix domain-containing protein | BST98_RS18965 | Not Available | Positive | 1012981 - 1013646 | 25109.2 |
| excisionase family protein | BST98_RS18970 | Not Available | Positive | 1014882 - 1015115 | 9027.98 |
| site-specific integrase | BST98_RS18975 | Not Available | Positive | 1015118 - 1016398 | 48317.3 |
| yfcz/yiis family protein | BST98_RS18980 | Not Available | Positive | 1016513 - 1016812 | 11030.9 |
| hypothetical protein | BST98_RS22465 | Not Available | Positive | 1016981 - 1017145 | 6089.45 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

