Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tcfc e-set like domain-containing protein | BST98_RS18880 | Not Available | Positive | 994303 - 996711 | 91404.5 |
| hypothetical protein | BST98_RS18885 | Not Available | Positive | 996708 - 997238 | 20054.5 |
| hypothetical protein | BST98_RS18890 | Not Available | Positive | 997255 - 998364 | 41556.9 |
| hypothetical protein | BST98_RS18895 | Not Available | Positive | 998606 - 999001 | 15049.5 |
| hypothetical protein | BST98_RS18905 | Not Available | Positive | 999573 - 1000010 | 16681.2 |
| arginine repressor | BST98_RS18915 | Not Available | Negative | 1000480 - 1000989 | 18909.4 |
| porin | BST98_RS18920 | Not Available | Negative | 1001178 - 1002134 | 35315.6 |
| deor/glpr family dna-binding transcription regulator | BST98_RS18925 | Not Available | Negative | 1003360 - 1004118 | 27692.5 |
| l-threonate dehydrogenase | BST98_RS18930 | Not Available | Positive | 1004371 - 1005276 | 31599.2 |
| 3-oxo-tetronate kinase | BST98_RS18935 | Not Available | Positive | 1005279 - 1006535 | 45265.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

