Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | BST98_RS18830 | Not Available | Negative | 982472 - 983362 | 34048.3 |
| caib/baif coa transferase family protein | BST98_RS18835 | Not Available | Positive | 983640 - 984827 | 43350.6 |
| hydroxymethylglutaryl-coa lyase | BST98_RS18840 | Not Available | Positive | 984829 - 985764 | 34512.7 |
| 3-isopropylmalate dehydratase large subunit | BST98_RS18845 | Not Available | Positive | 985767 - 987026 | 44795.9 |
| 3-isopropylmalate dehydratase | BST98_RS18850 | Not Available | Positive | 987030 - 987521 | 17821.5 |
| 2-methylaconitate cis-trans isomerase prpf family protein | BST98_RS18855 | Not Available | Positive | 987518 - 988654 | 40938.0 |
| slc13 family permease | BST98_RS18860 | Not Available | Positive | 988736 - 990013 | 46033.1 |
| hypothetical protein | BST98_RS18865 | Not Available | Positive | 991858 - 992832 | 35632.3 |
| hypothetical protein | BST98_RS18870 | Not Available | Positive | 992957 - 993526 | 19136.4 |
| hypothetical protein | BST98_RS18875 | Not Available | Positive | 993595 - 994290 | 26496.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

