Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transglutaminase-like cysteine peptidase | BST98_RS18675 | Not Available | Positive | 943831 - 944502 | 25696.2 |
| eal domain-containing protein | BST98_RS18680 | Not Available | Positive | 944508 - 946436 | 72503.7 |
| type i secretion system permease/atpase | BST98_RS18685 | Not Available | Positive | 946439 - 948559 | 78215.8 |
| lipoate--protein ligase | BST98_RS18690 | Not Available | Positive | 949084 - 950100 | 38441.3 |
| cation diffusion facilitator family transporter | BST98_RS18695 | Not Available | Negative | 950189 - 951127 | 34344.8 |
| hypothetical protein | BST98_RS18700 | Not Available | Positive | 951455 - 951718 | 10172.2 |
| hypothetical protein | BST98_RS18705 | Not Available | Negative | 951748 - 952038 | 10986.7 |
| mate family efflux transporter | BST98_RS18710 | Not Available | Negative | 952109 - 953310 | 44213.5 |
| protein translocase subunit secf | BST98_RS18715 | Not Available | Negative | 953421 - 954332 | 32982.5 |
| protein translocase subunit secd | BST98_RS18720 | Not Available | Negative | 954337 - 956166 | 66565.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

