Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydrolase | BST98_RS18560 | Not Available | Positive | 912245 - 913489 | 46346.7 |
| hth-type transcriptional regulator sgrr | BST98_RS18565 | Not Available | Negative | 913576 - 915264 | 65091.8 |
| nitroreductase family protein | BST98_RS18570 | Not Available | Positive | 915525 - 916253 | 27727.4 |
| hypothetical protein | BST98_RS18575 | Not Available | Positive | 916355 - 916867 | 19509.9 |
| heme no-binding domain-containing protein | BST98_RS18580 | Not Available | Positive | 917058 - 917591 | 20026.1 |
| atp-binding protein | BST98_RS18585 | Not Available | Positive | 917596 - 919308 | 64668.8 |
| retention module-containing protein | BST98_RS22390 | Not Available | Negative | 919419 - 940199 | 719779.0 |
| hlyd family type i secretion periplasmic adaptor subunit | BST98_RS18660 | Not Available | Positive | 940511 - 941908 | 51723.4 |
| tolc family outer membrane protein | BST98_RS18665 | Not Available | Positive | 941962 - 943221 | 47238.3 |
| ompa family protein | BST98_RS18670 | Not Available | Positive | 943235 - 943825 | 21297.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

