Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin domain-containing protein | BST98_RS18510 | Not Available | Positive | 903553 - 904338 | 28926.4 |
| ydcf family protein | BST98_RS18515 | Not Available | Negative | 904502 - 905149 | 23997.7 |
| yaeq family protein | BST98_RS18520 | Not Available | Negative | 905234 - 905773 | 20794.7 |
| giy-yig nuclease family protein | BST98_RS18525 | Not Available | Negative | 905916 - 906233 | 12473.1 |
| yceh family protein | BST98_RS18530 | Not Available | Negative | 906386 - 907042 | 24568.5 |
| duf3069 domain-containing protein | BST98_RS18535 | Not Available | Positive | 907342 - 907794 | 17321.6 |
| winged helix-turn-helix domain-containing protein | BST98_RS18540 | Not Available | Positive | 908177 - 909463 | 49282.6 |
| duf2797 domain-containing protein | BST98_RS18545 | Not Available | Positive | 909512 - 910330 | 30637.0 |
| phosphotransferase | BST98_RS18550 | Not Available | Negative | 910379 - 911269 | 34517.9 |
| hypothetical protein | BST98_RS18555 | Not Available | Positive | 911719 - 912177 | 18210.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

