Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system f family protein | BST98_RS01960 | Not Available | Negative | 391999 - 393225 | 45006.0 |
| type iv-a pilus assembly atpase pilb | BST98_RS01965 | Not Available | Negative | 393290 - 394981 | 62586.9 |
| pilin | BST98_RS01970 | Not Available | Negative | 394981 - 395376 | 13226.9 |
| 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd | BST98_RS01975 | Not Available | Positive | 395762 - 396340 | 21552.3 |
| pyruvate dehydrogenase complex transcriptional repressor pdhr | BST98_RS01980 | Not Available | Positive | 396700 - 397473 | 29662.5 |
| pyruvate dehydrogenase (acetyl-transferring), homodimeric type | BST98_RS01985 | Not Available | Positive | 397554 - 400214 | 99325.0 |
| pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | BST98_RS01990 | Not Available | Positive | 400227 - 402086 | 64619.3 |
| dihydrolipoyl dehydrogenase | BST98_RS01995 | Not Available | Positive | 402264 - 403694 | 50912.8 |
| hypothetical protein | BST98_RS02000 | Not Available | Negative | 403778 - 404323 | 19431.8 |
| lruc domain-containing protein | BST98_RS02005 | Not Available | Negative | 404336 - 406402 | 74187.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

