Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional activator ilvy | BST98_RS00155 | Not Available | Negative | 33322 - 34200 | 32466.3 |
| ketol-acid reductoisomerase | BST98_RS00160 | Not Available | Positive | 34328 - 35815 | 55040.8 |
| ubiquinone biosynthesis accessory factor ubik | BST98_RS00165 | Not Available | Negative | 35890 - 36150 | 10028.1 |
| multidrug efflux rnd transporter permease subunit | BST98_RS00170 | Not Available | Negative | 36284 - 39400 | 112283.0 |
| efflux rnd transporter periplasmic adaptor subunit | BST98_RS00175 | Not Available | Negative | 39413 - 40519 | 40761.1 |
| tetr/acrr family transcriptional regulator | BST98_RS00180 | Not Available | Negative | 40543 - 41109 | 21582.1 |
| dna helicase rep | BST98_RS00185 | Not Available | Positive | 41299 - 43317 | 77539.5 |
| c-type cytochrome | BST98_RS00190 | Not Available | Negative | 43395 - 43805 | 14578.4 |
| Trna-arg | Not Available | Not Available | Positive | 44084 - 44160 | Not Available |
| Trna-his | Not Available | Not Available | Positive | 44192 - 44267 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

