Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome biogenesis gtpase ylqf | BST98_RS18410 | Not Available | Positive | 875682 - 876635 | 36298.0 |
| hypothetical protein | BST98_RS18415 | Not Available | Negative | 876707 - 877132 | 15711.7 |
| dead/deah box helicase | BST98_RS18420 | Not Available | Positive | 877466 - 878758 | 48327.6 |
| beta-ketoacyl synthase | BST98_RS18425 | Not Available | Negative | 878898 - 880754 | 66117.5 |
| glxa family transcriptional regulator | BST98_RS18430 | Not Available | Positive | 880913 - 881896 | 37191.5 |
| hypothetical protein | BST98_RS18435 | Not Available | Negative | 881980 - 882240 | 9596.58 |
| alpha-hydroxy acid oxidase | BST98_RS18440 | Not Available | Positive | 882607 - 883770 | 43208.7 |
| ubiquinone-dependent pyruvate dehydrogenase | BST98_RS18445 | Not Available | Negative | 883852 - 885570 | 62230.6 |
| membrane integrity-associated transporter subunit pqic | BST98_RS18450 | Not Available | Negative | 885892 - 886455 | 20566.7 |
| intermembrane transport protein pqib | BST98_RS18455 | Not Available | Negative | 886458 - 888101 | 60254.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

