Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BST98_RS18210 | Not Available | Negative | 816253 - 816606 | 12560.9 |
| abc transporter permease | BST98_RS18215 | Not Available | Negative | 816773 - 817924 | 43021.3 |
| abc transporter permease | BST98_RS18220 | Not Available | Negative | 817921 - 819102 | 44539.9 |
| hlyd family secretion protein | BST98_RS18225 | Not Available | Negative | 819107 - 820081 | 35969.1 |
| tolc family protein | BST98_RS18230 | Not Available | Negative | 820078 - 821517 | 52989.8 |
| tetr/acrr family transcriptional regulator | BST98_RS18235 | Not Available | Negative | 821686 - 822147 | 17510.0 |
| l,d-transpeptidase family protein | BST98_RS18240 | Not Available | Negative | 822361 - 823080 | 27384.0 |
| amp-binding protein | BST98_RS18245 | Not Available | Positive | 823405 - 825030 | 60976.8 |
| duf4832 domain-containing protein | BST98_RS18250 | Not Available | Positive | 825283 - 826797 | 58352.5 |
| duf4832 domain-containing protein | BST98_RS18255 | Not Available | Positive | 826918 - 828477 | 59438.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

