Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | BST98_RS18160 | Not Available | Negative | 804841 - 805503 | 25146.9 |
| cytosine permease | BST98_RS18165 | Not Available | Positive | 806384 - 807625 | 43249.6 |
| cytosine deaminase | BST98_RS18170 | Not Available | Positive | 807637 - 808926 | 48364.1 |
| trypsin-like serine protease | BST98_RS18175 | Not Available | Negative | 809017 - 810222 | 42985.9 |
| phna domain-containing protein | BST98_RS22485 | Not Available | Positive | 810667 - 811242 | 20935.8 |
| lysr family transcriptional regulator | BST98_RS18185 | Not Available | Positive | 811431 - 812330 | 33929.8 |
| n-acetylneuraminate epimerase | BST98_RS18190 | Not Available | Negative | 812400 - 813551 | 41800.2 |
| glutathione s-transferase | BST98_RS18195 | Not Available | Positive | 813758 - 814414 | 25762.3 |
| sugar o-acetyltransferase | BST98_RS18200 | Not Available | Negative | 814418 - 814975 | 20254.3 |
| dyp-type peroxidase | BST98_RS18205 | Not Available | Positive | 815220 - 816161 | 35422.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

