Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-amylase | BST98_RS18060 | Not Available | Negative | 779903 - 781969 | 78211.4 |
| pullulanase-type alpha-1,6-glucosidase | BST98_RS18065 | Not Available | Negative | 782040 - 785351 | 121992.0 |
| glycogen synthase glga | BST98_RS18070 | Not Available | Negative | 785603 - 787120 | 56996.5 |
| glucose-1-phosphate adenylyltransferase | BST98_RS18075 | Not Available | Negative | 787110 - 788327 | 45074.1 |
| pepsy domain-containing protein | BST98_RS18080 | Not Available | Negative | 788842 - 789102 | 9693.62 |
| amidohydrolase | BST98_RS18085 | Not Available | Positive | 789257 - 790396 | 42331.2 |
| class ii fumarate hydratase | BST98_RS18090 | Not Available | Positive | 790475 - 791860 | 49154.2 |
| gnat family n-acetyltransferase | BST98_RS18095 | Not Available | Negative | 791941 - 792369 | 16341.1 |
| bile acid:sodium symporter family protein | BST98_RS18100 | Not Available | Positive | 792589 - 793449 | 30880.9 |
| tetratricopeptide repeat protein | BST98_RS18105 | Not Available | Positive | 793615 - 794616 | 37999.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

