Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marc family protein | BST98_RS17910 | Not Available | Negative | 746114 - 746764 | 22595.2 |
| cyclic diguanylate phosphodiesterase | BST98_RS17915 | Not Available | Negative | 746901 - 748367 | 55699.0 |
| hypothetical protein | BST98_RS17920 | Not Available | Negative | 748333 - 748551 | 8814.75 |
| helix-turn-helix transcriptional regulator | BST98_RS17925 | Not Available | Negative | 748896 - 749204 | 12140.0 |
| nadh:ubiquinone oxidoreductase | BST98_RS17930 | Not Available | Negative | 749799 - 750158 | 13277.8 |
| formate dehydrogenase subunit alpha | BST98_RS17935 | Not Available | Negative | 750298 - 754455 | 152148.0 |
| cupin domain-containing protein | BST98_RS17940 | Not Available | Negative | 754821 - 755189 | 13828.1 |
| hypothetical protein | BST98_RS17945 | Not Available | Positive | 755826 - 756446 | 24093.0 |
| voc family protein | BST98_RS17950 | Not Available | Negative | 756481 - 756876 | 15236.1 |
| hypothetical protein | BST98_RS17955 | Not Available | Negative | 757084 - 757335 | 9575.43 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

