Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BST98_RS17565 | Not Available | Positive | 673668 - 674099 | 16738.8 |
| duf3389 domain-containing protein | BST98_RS17570 | Not Available | Negative | 674158 - 674394 | 8393.09 |
| hotdog fold thioesterase | BST98_RS17575 | Not Available | Negative | 674391 - 674825 | 15956.2 |
| type i restriction endonuclease subunit r | BST98_RS17580 | Not Available | Negative | 675187 - 678441 | 122727.0 |
| pddexk nuclease domain-containing protein | BST98_RS17585 | Not Available | Negative | 678438 - 679490 | 39427.4 |
| restriction endonuclease subunit s | BST98_RS17590 | Not Available | Negative | 679499 - 680794 | 48086.4 |
| type i restriction-modification system subunit m | BST98_RS17595 | Not Available | Negative | 680784 - 682487 | 63982.0 |
| hypothetical protein | BST98_RS17600 | Not Available | Positive | 682924 - 684738 | 70268.8 |
| hypothetical protein | BST98_RS17605 | Not Available | Negative | 685205 - 685909 | 26776.3 |
| mate family efflux transporter | BST98_RS17855 | Not Available | Positive | 734583 - 735587 | 38041.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

