Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-methyltransferase | BST98_RS17415 | Not Available | Positive | 637938 - 638612 | 26240.4 |
| hd domain-containing protein | BST98_RS17420 | Not Available | Negative | 638601 - 639230 | 23678.2 |
| mate family efflux transporter | BST98_RS17425 | Not Available | Negative | 639298 - 640647 | 48811.3 |
| nucleoside triphosphate pyrophosphohydrolase family protein | BST98_RS17430 | Not Available | Negative | 640791 - 641369 | 22006.3 |
| glycerophosphodiester phosphodiesterase family protein | BST98_RS17435 | Not Available | Positive | 641726 - 642469 | 28077.4 |
| cation:proton antiporter | BST98_RS17440 | Not Available | Positive | 642792 - 644072 | 46462.2 |
| type ii toxin-antitoxin system rele/pare family toxin | BST98_RS17445 | Not Available | Negative | 644168 - 644533 | 14044.3 |
| mlic family protein | BST98_RS17450 | Not Available | Positive | 644752 - 645330 | 21404.5 |
| aromatic amino acid transaminase | BST98_RS17455 | Not Available | Negative | 645445 - 646623 | 42823.6 |
| duf3081 family protein | BST98_RS17460 | Not Available | Positive | 646790 - 647095 | 11757.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

