Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter substrate-binding domain-containing protein | BST98_RS17210 | Not Available | Positive | 591664 - 592758 | 41330.9 |
| atpase rava stimulator viaa | BST98_RS17215 | Not Available | Negative | 593105 - 594562 | 56004.2 |
| atpase rava domain-containing protein | BST98_RS17220 | Not Available | Negative | 594591 - 596243 | 62415.6 |
| ggdef domain-containing protein | BST98_RS17225 | Not Available | Positive | 596737 - 597606 | 32652.5 |
| sulfurtransferase | BST98_RS17230 | Not Available | Negative | 597700 - 598554 | 31666.4 |
| lipid a deacylase lpxr family protein | BST98_RS17235 | Not Available | Positive | 598706 - 599737 | 38594.2 |
| duf5718 family protein | BST98_RS17240 | Not Available | Negative | 599808 - 600638 | 30584.1 |
| hypothetical protein | BST98_RS17245 | Not Available | Positive | 600892 - 601212 | 12203.7 |
| formylglycine-generating enzyme family protein | BST98_RS17250 | Not Available | Positive | 601531 - 602550 | 38798.4 |
| hypothetical protein | BST98_RS17260 | Not Available | Negative | 603169 - 604113 | 36211.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

