Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family nad(p)-dependent oxidoreductase | BST98_RS17160 | Not Available | Negative | 581143 - 581922 | 28266.3 |
| nuclear transport factor 2 family protein | BST98_RS17165 | Not Available | Negative | 581919 - 582359 | 17015.4 |
| deoxyribodipyrimidine photo-lyase | BST98_RS17170 | Not Available | Negative | 582444 - 583928 | 57345.3 |
| merr family transcriptional regulator | BST98_RS17175 | Not Available | Negative | 583937 - 584758 | 30844.9 |
| ybga family protein | BST98_RS17180 | Not Available | Negative | 584780 - 585727 | 36366.1 |
| response regulator transcription factor | BST98_RS17185 | Not Available | Positive | 586041 - 586748 | 26623.4 |
| sensor histidine kinase | BST98_RS17190 | Not Available | Positive | 586763 - 588100 | 51406.3 |
| phosphoethanolamine transferase | BST98_RS17195 | Not Available | Positive | 588189 - 589862 | 63672.7 |
| glycine zipper family protein | BST98_RS17200 | Not Available | Positive | 589962 - 590360 | 13548.2 |
| 23s rrna (adenine(1618)-n(6))-methyltransferase rlmf | BST98_RS17205 | Not Available | Negative | 590449 - 591447 | 37016.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

