Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine-type recombinase/integrase | BST98_RS16910 | Not Available | Negative | 532960 - 533931 | 37073.5 |
| duf3319 domain-containing protein | BST98_RS16915 | Not Available | Positive | 534226 - 534585 | 13831.7 |
| atp-dependent zinc protease | BST98_RS16920 | Not Available | Negative | 534640 - 535146 | 18677.4 |
| had family hydrolase | BST98_RS16925 | Not Available | Negative | 535245 - 535844 | 22840.5 |
| stress response translation initiation inhibitor ycih | BST98_RS16930 | Not Available | Positive | 535967 - 536278 | 11076.6 |
| linear amide c-n hydrolase | BST98_RS16935 | Not Available | Negative | 536349 - 537437 | 39369.0 |
| hypothetical protein | BST98_RS16940 | Not Available | Negative | 537537 - 538757 | 45730.3 |
| c40 family peptidase | BST98_RS16945 | Not Available | Positive | 539087 - 539575 | 18953.7 |
| mate family efflux transporter | BST98_RS16950 | Not Available | Positive | 539988 - 540119 | 5268.53 |
| hypothetical protein | BST98_RS16955 | Not Available | Negative | 540113 - 540400 | 11234.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

