Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | BST98_RS16815 | Not Available | Positive | 512456 - 513802 | 51109.8 |
| mate family efflux transporter | BST98_RS16820 | Not Available | Positive | 513959 - 515323 | 49094.3 |
| spor domain-containing protein | BST98_RS16825 | Not Available | Negative | 515412 - 515954 | 20010.2 |
| lexa family protein | BST98_RS16830 | Not Available | Positive | 516260 - 516643 | 14505.3 |
| y-family dna polymerase | BST98_RS16835 | Not Available | Positive | 516659 - 517951 | 48941.8 |
| hypothetical protein | BST98_RS22380 | Not Available | Positive | 518067 - 518216 | 5453.04 |
| helix-turn-helix transcriptional regulator | BST98_RS16840 | Not Available | Negative | 518257 - 519051 | 30733.8 |
| ybhb/ybcl family raf kinase inhibitor-like protein | BST98_RS16845 | Not Available | Negative | 519150 - 519629 | 17386.4 |
| clbs/dfsb family four-helix bundle protein | BST98_RS16850 | Not Available | Positive | 519813 - 520319 | 19807.8 |
| alternative ribosome rescue aminoacyl-trna hydrolase arfb | BST98_RS16855 | Not Available | Positive | 520394 - 520807 | 15610.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

