Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yibl family ribosome-associated protein | BST98_RS16765 | Not Available | Negative | 503372 - 503728 | 13446.5 |
| divalent-cation tolerance protein cuta | BST98_RS16770 | Not Available | Positive | 503844 - 504179 | 12642.2 |
| methylenetetrahydrofolate reductase | BST98_RS16775 | Not Available | Positive | 504337 - 505356 | 38734.3 |
| mfs transporter | BST98_RS16780 | Not Available | Negative | 505426 - 506736 | 47564.0 |
| c-type cytochrome | BST98_RS16785 | Not Available | Negative | 507195 - 507521 | 12054.5 |
| lecithin retinol acyltransferase family protein | BST98_RS16790 | Not Available | Positive | 507672 - 508169 | 18089.0 |
| nudix hydrolase | BST98_RS16795 | Not Available | Negative | 508164 - 508682 | 19577.3 |
| ggdef domain-containing protein | BST98_RS16800 | Not Available | Negative | 508849 - 509922 | 40270.1 |
| alpha/beta fold hydrolase | BST98_RS16805 | Not Available | Negative | 510013 - 510942 | 34635.6 |
| udp-glucose 4-epimerase gale | BST98_RS16810 | Not Available | Positive | 511217 - 512233 | 36959.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

