Photobacterium damselae strain Phdp Wu-1

CoccusMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae strain Phdp Wu-1 is a Gram-negative, coccus-shaped bacterium primarily found in marine environments, particularly within Italian aquaculture settings. This strain is characterized by its mesophilic temperature range, indicating optimal growth at moderate temperatures. It possesses flagella, which contribute to its motility, allowing it to navigate its aquatic habitat effectively. P. damselae strain Phdp Wu-1 has a notable genetic structure, consisting of three replicons. This genetic configuration may play a role in its adaptability and survival in a competitive marine ecosystem. The bacterium has been identified as a pathogen, associated with soft-tissue infections in humans (Homo sapiens) and also affecting seabirds such as the razorbill (Alca torda). The presence of P. damselae in aquaculture systems raises concerns about potential health impacts on both human populations and wildlife, particularly in regions where aquaculture practices intersect with natural habitats. The strain's ability to cause infections highlights the importance of monitoring and managing microbial populations in aquaculture to prevent outbreaks that could affect both public health and biodiversity. Accessions for this strain include NZ_CP018297.1, NZ_CP018298.1, and NZ_CP018299.1, which provide genetic sequences that may be valuable for further research into its pathogenic mechanisms and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainstrain Phdp Wu-1

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Photobacterium damselae strain Phdp Wu-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
HabitatItalian aquaculture; Marine
Biotic relationshipNot Available
Host(s)Homo sapiens, Alca torda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete

Gene Summary

Adenine Count

929587 bp

Thymine Count

931950 bp

Guanine Count

663051 bp

Cytosine Count

665361 bp

Genome Length

3189949 bp

Protein-coding Genes

2659 genes

Non-Coding Genes

265 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
stringent starvation protein sspaBST98_RS01810Not AvailablePositive360365 - 36100324348.3
clpxp protease specificity-enhancing factorBST98_RS01815Not AvailablePositive361005 - 36150818257.6
bon domain-containing proteinBST98_RS01820Not AvailableNegative361578 - 36211419549.6
phosphoheptose isomeraseBST98_RS01825Not AvailableNegative362118 - 36270820910.2
yran family proteinBST98_RS01830Not AvailableNegative362712 - 36308614370.2
carboxylating nicotinate-nucleotide diphosphorylaseBST98_RS01835Not AvailablePositive363323 - 36421032056.4
penicillin-binding protein activatorBST98_RS01840Not AvailableNegative364260 - 36617370202.5
16s rrna (cytidine(1402)-2'-o)-methyltransferaseBST98_RS01845Not AvailablePositive366235 - 36709531372.7
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive367209 - 367638Not Available
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhBST98_RS01855Not AvailablePositive367863 - 36881034939.8

Displaying genes 361 – 370 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft-tissue infectionCausesPMC8231020

Displaying health effects 1 – 1 of 1 in total