Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| stringent starvation protein sspa | BST98_RS01810 | Not Available | Positive | 360365 - 361003 | 24348.3 |
| clpxp protease specificity-enhancing factor | BST98_RS01815 | Not Available | Positive | 361005 - 361508 | 18257.6 |
| bon domain-containing protein | BST98_RS01820 | Not Available | Negative | 361578 - 362114 | 19549.6 |
| phosphoheptose isomerase | BST98_RS01825 | Not Available | Negative | 362118 - 362708 | 20910.2 |
| yran family protein | BST98_RS01830 | Not Available | Negative | 362712 - 363086 | 14370.2 |
| carboxylating nicotinate-nucleotide diphosphorylase | BST98_RS01835 | Not Available | Positive | 363323 - 364210 | 32056.4 |
| penicillin-binding protein activator | BST98_RS01840 | Not Available | Negative | 364260 - 366173 | 70202.5 |
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | BST98_RS01845 | Not Available | Positive | 366235 - 367095 | 31372.7 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 367209 - 367638 | Not Available |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | BST98_RS01855 | Not Available | Positive | 367863 - 368810 | 34939.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

